Collection of DNA sequencing datasets (raw data) generated via DNA metabarcoding of environmental samples (e.g. water and sediments) and Illumina sequencing.
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1 to 10 of 12 Results
ecoPCR results
Jun 24, 2024
Zimmermann, Heike, 2024, "ecoPCR results", https://doi.org/10.22008/FK2/A8PSA1, GEUS Dataverse, V1
This dataset contains the processed output generated by the program ecoPCR (Ficetola et al., 2010) as fasta files. ecoPCR performs in silico PCRs of given primer pairs based on on a database (here the EMBL release 143, downloaded March 2021) without the standard releases of human...
marker.lineages.df.txt
Jun 24, 2024 - ecoPCR results
Plain Text - 92.1 MB - MD5: 779ea7f6f08f3de334e13d3b39662016
Input file for subsequent analyses in R (see https://github.com/ZimmermannHH/Marker_Comparison/tree/main/r-project)
V3_SAR_V3_e3_embl143_final_db.fasta
Jun 24, 2024 - ecoPCR results
Unknown - 2.4 MB - MD5: eb813d3f77a54ac47563fb6a366adda2
V4_E572F_E1009R_e3_embl143_final_db.fasta
Jun 24, 2024 - ecoPCR results
Unknown - 50.1 MB - MD5: 56c90040335f5db98d0ba722d516601c
V7_1183mod_1443mod_e3_embl143_final_db.fasta
Jun 24, 2024 - ecoPCR results
Unknown - 28.4 MB - MD5: c7ffcb97a97cacff59efb6e21ec64f02
V7_18S_allshorts_correctprimer_e3_embl143_final_db.fasta
Jun 24, 2024 - ecoPCR results
Unknown - 21.0 MB - MD5: 196a0ef03034f372c24380c48245360b
V7_18S_allshorts_modF_e3_embl143_final_db.fasta
Jun 24, 2024 - ecoPCR results
Unknown - 20.8 MB - MD5: b1e5b0f5f94b4f7757a63f193693d3dc
V7_960F_NSR1438_e3_embl143_final_db.fasta
Jun 24, 2024 - ecoPCR results
Unknown - 26.5 MB - MD5: 7726b83b6e5b9fe4d261c7fcbc765381
V9_1388F_1510R_e3_embl143_final_db.fasta
Jun 24, 2024 - ecoPCR results
Unknown - 7.4 MB - MD5: 5271fb41fd65f4627f86559abccf342b
V9_1389F_1510R_e3_embl143_final_db.fasta
Jun 24, 2024 - ecoPCR results
Unknown - 8.1 MB - MD5: 63f3564b49155909b149c000003718cb
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